Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs12926669 chr16:1502864 A/G 1.25E-7 181 13.18 13.73 4 KM Plot
ESCA rs12926972 chr16:1511811 C/T 6.03E-8 181 13.33 13.42 4 KM Plot
ESCA rs12932780 chr16:1498951 C/T 1.33E-7 182 13.18 14.12 4 KM Plot
ESCA rs12933110 chr16:1507238 A/G 1.55E-7 180 13.03 13.73 4 KM Plot
ESCA rs12934261 chr16:1504215 G/A 1.25E-7 181 13.18 13.73 4 KM Plot
ESCA rs12935737 chr16:1504437 C/T 1.86E-7 180 13.18 13.42 4 KM Plot
ESCA rs12959790 chr18:12613023 T/C 2.48E-5 183 13.33 16 4.77 KM Plot
ESCA rs12967204 chr18:12648084 T/C 2.4E-5 179 13.03 16 4.35 KM Plot
ESCA rs12971041 chr18:12584074 G/T 3.79E-5 184 5.07 16 13.33 KM Plot
ESCA rs13050554 chr21:45579901 A/G 7.89E-6 183 2.93 13.97 13.22 KM Plot
ESCA rs13056219 chr22:19860846 C/T 2.34E-5 178 13.03 18.67 3.73 KM Plot
ESCA rs13059238 chr3:46007825 T/C 0 183 13.33 12.6 0.8 KM Plot
ESCA rs13066062 chr3:46018344 G/A 0 183 13.37 12.6 0.8 KM Plot
ESCA rs13071283 chr3:46010007 T/C 0 182 13.33 13.1 0.8 KM Plot
ESCA rs13075758 chr3:46025048 G/A 0 183 13.37 12.6 0.8 KM Plot